Variant report

Variant	rs10735923
Chromosome Location	chr12:64687683-64687684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr12:64687470-64687776	HepG2	liver:	n/a	n/a
2	RFX5	chr12:64687631-64688229	IMR90	lung:	n/a	n/a
3	RFX5	chr12:64687640-64688084	GM12878	blood:	n/a	n/a
4	RFX5	chr12:64687524-64688222	SK-N-SH	brain:	n/a	n/a
5	CREB1	chr12:64687608-64688125	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64687653..64690204-chr12:64799240..64801384,2	K562	blood:
2	chr12:64687262..64689026-chr12:64689031..64691176,2	MCF-7	breast:

Variant related genes	Relation type
C12orf56	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10784393	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10784399	1.00[EUR][1000 genomes]
rs11831579	1.00[EUR][1000 genomes]
rs11836616	1.00[EUR][1000 genomes]
rs1347577	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1613429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1708205	1.00[EUR][1000 genomes]
rs17100200	1.00[EUR][1000 genomes]
rs17100256	1.00[EUR][1000 genomes]
rs17100259	1.00[EUR][1000 genomes]
rs1836865	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1865799	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2335358	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2575287	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs2575288	1.00[AMR][1000 genomes]
rs2643662	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs2878282	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4237926	1.00[EUR][1000 genomes]
rs4503636	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4606564	1.00[EUR][1000 genomes]
rs4763013	1.00[EUR][1000 genomes]
rs4763014	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55973281	1.00[EUR][1000 genomes]
rs56011088	1.00[EUR][1000 genomes]
rs56784792	1.00[EUR][1000 genomes]
rs58160282	1.00[EUR][1000 genomes]
rs59450427	1.00[EUR][1000 genomes]
rs60242151	1.00[EUR][1000 genomes]
rs73311817	1.00[EUR][1000 genomes]
rs73311823	1.00[EUR][1000 genomes]
rs73311828	1.00[EUR][1000 genomes]
rs73325081	1.00[EUR][1000 genomes]
rs73325098	1.00[EUR][1000 genomes]
rs73327118	1.00[EUR][1000 genomes]
rs73327129	1.00[EUR][1000 genomes]
rs73327138	1.00[EUR][1000 genomes]
rs73327148	1.00[EUR][1000 genomes]
rs73327152	1.00[EUR][1000 genomes]
rs73327153	1.00[EUR][1000 genomes]
rs790015	1.00[AMR][1000 genomes]
rs7973979	1.00[EUR][1000 genomes]
rs7974953	1.00[EUR][1000 genomes]
rs9888445	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3405294	chr12:64681135-64687933	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64667600-64694400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:64687200-64687800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:64687200-64687800	Enhancers	HepG2	liver
4	chr12:64687200-64688600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:64687200-64688600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr12:64687400-64687800	Flanking Active TSS	GM12878-XiMat	blood
7	chr12:64687600-64687800	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links