Variant report

Variant	rs10784399
Chromosome Location	chr12:64687382-64687383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr12:64687254-64687449	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64687262..64689026-chr12:64689031..64691176,2	MCF-7	breast:

Variant related genes	Relation type
C12orf56	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10735923	1.00[EUR][1000 genomes]
rs11831579	1.00[EUR][1000 genomes]
rs11836616	1.00[EUR][1000 genomes]
rs1347577	0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1613429	1.00[EUR][1000 genomes]
rs1708205	1.00[EUR][1000 genomes]
rs17100200	1.00[EUR][1000 genomes]
rs17100256	1.00[EUR][1000 genomes]
rs17100259	1.00[EUR][1000 genomes]
rs1836865	1.00[EUR][1000 genomes]
rs1865799	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2335358	0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2878282	1.00[EUR][1000 genomes]
rs4237926	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4503636	1.00[EUR][1000 genomes]
rs4606564	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4763013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55973281	1.00[EUR][1000 genomes]
rs56011088	1.00[EUR][1000 genomes]
rs56784792	1.00[EUR][1000 genomes]
rs58160282	1.00[EUR][1000 genomes]
rs59450427	1.00[EUR][1000 genomes]
rs60242151	1.00[EUR][1000 genomes]
rs73311817	1.00[EUR][1000 genomes]
rs73311823	1.00[EUR][1000 genomes]
rs73311828	1.00[EUR][1000 genomes]
rs73325081	1.00[EUR][1000 genomes]
rs73325098	1.00[EUR][1000 genomes]
rs73327118	1.00[EUR][1000 genomes]
rs73327129	1.00[EUR][1000 genomes]
rs73327138	1.00[EUR][1000 genomes]
rs73327148	1.00[EUR][1000 genomes]
rs73327152	1.00[EUR][1000 genomes]
rs73327153	1.00[EUR][1000 genomes]
rs7971774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7973979	1.00[EUR][1000 genomes]
rs7974953	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9888445	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3405294	chr12:64681135-64687933	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64667600-64694400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:64687000-64687400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr12:64687000-64687400	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr12:64687200-64687400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:64687200-64687400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr12:64687200-64687400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr12:64687200-64687400	Enhancers	GM12878-XiMat	blood
8	chr12:64687200-64687600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:64687200-64687600	Flanking Active TSS	K562	blood
10	chr12:64687200-64687800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:64687200-64687800	Enhancers	HepG2	liver
12	chr12:64687200-64688600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr12:64687200-64688600	Enhancers	Monocytes-CD14+_RO01746	blood

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