Variant report

Variant	rs73327118
Chromosome Location	chr12:64659270-64659271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr12:64659217-64660256	GM12878	blood:	n/a	chr12:64659815-64659824 chr12:64659813-64659826 chr12:64660219-64660228 chr12:64659812-64659825 chr12:64659819-64659828 chr12:64659816-64659823

Variant related genes	Relation type
ENSG00000256192	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10735923	1.00[EUR][1000 genomes]
rs10784399	1.00[EUR][1000 genomes]
rs11831579	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11836616	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1347577	1.00[EUR][1000 genomes]
rs1613429	1.00[EUR][1000 genomes]
rs1708205	1.00[EUR][1000 genomes]
rs17100200	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17100256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17100259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1836865	1.00[EUR][1000 genomes]
rs1865799	1.00[EUR][1000 genomes]
rs2335358	1.00[EUR][1000 genomes]
rs2878282	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4237926	1.00[EUR][1000 genomes]
rs4503636	1.00[EUR][1000 genomes]
rs4606564	1.00[EUR][1000 genomes]
rs4763013	1.00[EUR][1000 genomes]
rs55973281	1.00[EUR][1000 genomes]
rs56011088	1.00[EUR][1000 genomes]
rs56784792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58160282	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59450427	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60145227	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60242151	1.00[EUR][1000 genomes]
rs73311817	1.00[EUR][1000 genomes]
rs73311823	1.00[EUR][1000 genomes]
rs73311828	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73325081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73325098	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327138	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327148	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327153	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7973979	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7974953	1.00[EUR][1000 genomes]
rs9888445	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64650600-64662200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:64651000-64667800	Weak transcription	Placenta	Placenta
3	chr12:64658400-64665600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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