Variant report

Variant	rs73327140
Chromosome Location	chr12:64671466-64671467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11831579	0.93[AFR][1000 genomes]
rs11836616	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17100200	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17100256	1.00[AMR][1000 genomes]
rs17100259	1.00[AMR][1000 genomes]
rs2878282	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56784792	1.00[AMR][1000 genomes]
rs58160282	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59450427	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60145227	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311828	0.89[AFR][1000 genomes]
rs73325081	1.00[AMR][1000 genomes]
rs73325098	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327129	1.00[AMR][1000 genomes]
rs73327138	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327148	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327152	1.00[AMR][1000 genomes]
rs73327153	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7973979	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv973084	chr12:64670913-64671689	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64667600-64694400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:64668000-64677200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:64668000-64687200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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