Variant report

Variant	rs17100256
Chromosome Location	chr12:64671177-64671178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64670449..64671990-chr12:64789105..64792055,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243024	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10735923	1.00[EUR][1000 genomes]
rs10784399	1.00[EUR][1000 genomes]
rs11831579	1.00[EUR][1000 genomes]
rs11836616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1347577	1.00[EUR][1000 genomes]
rs1613429	1.00[EUR][1000 genomes]
rs1708205	1.00[EUR][1000 genomes]
rs17100200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17100259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17100272	0.87[AFR][1000 genomes]
rs1836865	1.00[EUR][1000 genomes]
rs1865799	1.00[EUR][1000 genomes]
rs2335358	1.00[EUR][1000 genomes]
rs2878282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4237926	1.00[EUR][1000 genomes]
rs4503636	1.00[EUR][1000 genomes]
rs4606564	1.00[EUR][1000 genomes]
rs4763013	1.00[EUR][1000 genomes]
rs55973281	1.00[EUR][1000 genomes]
rs56011088	1.00[EUR][1000 genomes]
rs56784792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58160282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59450427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60145227	1.00[AMR][1000 genomes]
rs60242151	1.00[EUR][1000 genomes]
rs73311817	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73311823	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73311828	1.00[EUR][1000 genomes]
rs73325081	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73325098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327140	1.00[AMR][1000 genomes]
rs73327148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327152	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7973979	1.00[EUR][1000 genomes]
rs7974953	1.00[EUR][1000 genomes]
rs9888445	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv973084	chr12:64670913-64671689	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64667600-64694400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:64668000-64677200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:64668000-64687200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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