Variant report

Variant	rs11834546
Chromosome Location	chr12:83954924-83954925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11832871	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11833522	1.00[AMR][1000 genomes]
rs11833794	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11834336	1.00[AMR][1000 genomes]
rs11835129	1.00[AMR][1000 genomes]
rs11836498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11837805	1.00[AMR][1000 genomes]
rs12827436	1.00[AMR][1000 genomes]
rs56801031	1.00[AMR][1000 genomes]
rs57058044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61425721	1.00[AMR][1000 genomes]
rs74107163	1.00[AMR][1000 genomes]
rs74107178	1.00[AMR][1000 genomes]
rs74107182	1.00[AMR][1000 genomes]
rs74107186	1.00[AMR][1000 genomes]
rs74107935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107978	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83954200-83955200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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