Variant report

Variant	rs74107935
Chromosome Location	chr12:83951025-83951026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11832871	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11833522	1.00[AMR][1000 genomes]
rs11833794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11834336	1.00[AMR][1000 genomes]
rs11834546	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11835129	1.00[AMR][1000 genomes]
rs11836498	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11837805	1.00[AMR][1000 genomes]
rs12827436	1.00[AMR][1000 genomes]
rs56801031	1.00[AMR][1000 genomes]
rs57058044	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61425721	1.00[AMR][1000 genomes]
rs74107163	1.00[AMR][1000 genomes]
rs74107178	1.00[AMR][1000 genomes]
rs74107182	1.00[AMR][1000 genomes]
rs74107186	1.00[AMR][1000 genomes]
rs74107936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107978	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83950400-83953000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links