Variant report

Variant	rs74107178
Chromosome Location	chr12:84026515-84026516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11832871	1.00[AMR][1000 genomes]
rs11833522	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11833794	1.00[AMR][1000 genomes]
rs11834336	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11834546	1.00[AMR][1000 genomes]
rs11835129	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11836498	1.00[AMR][1000 genomes]
rs11837805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12827436	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56801031	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57058044	1.00[AMR][1000 genomes]
rs61425721	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107182	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107186	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107935	1.00[AMR][1000 genomes]
rs74107936	1.00[AMR][1000 genomes]
rs74107978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469496	chr12:84014359-84074475	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv559562	chr12:84014359-84074475	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv559563	chr12:84017043-84450824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:84024800-84034000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:84025800-84026800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr12:84026400-84026800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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