Variant report

Variant	rs11835416
Chromosome Location	chr12:124358121-124358122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:124356133..124358966-chr12:124481897..124483863,2	MCF-7	breast:
2	chr12:124351595..124353635-chr12:124356736..124359144,2	K562	blood:
3	chr12:124350568..124353635-chr12:124356736..124359633,3	K562	blood:

Variant related genes	Relation type
ENSG00000179195	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11833681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11834289	1.00[TSI][hapmap]
rs11836598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099459	1.00[MEX][hapmap]
rs1343668	1.00[MEX][hapmap]
rs1873224	1.00[MEX][hapmap]
rs56025259	1.00[EUR][1000 genomes]
rs56096831	1.00[EUR][1000 genomes]
rs57024764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57861885	1.00[EUR][1000 genomes]
rs58292766	1.00[EUR][1000 genomes]
rs59107032	1.00[EUR][1000 genomes]
rs59540041	1.00[EUR][1000 genomes]
rs59689888	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60422087	1.00[EUR][1000 genomes]
rs60509888	1.00[EUR][1000 genomes]
rs60571579	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60654678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60890562	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61174884	1.00[EUR][1000 genomes]
rs61231375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61730202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61735933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7134843	0.96[AFR][1000 genomes]
rs7135932	1.00[EUR][1000 genomes]
rs7296360	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409432	1.00[EUR][1000 genomes]
rs73420341	1.00[EUR][1000 genomes]
rs73420349	1.00[EUR][1000 genomes]
rs73420352	1.00[EUR][1000 genomes]
rs7962743	1.00[EUR][1000 genomes]
rs7962913	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7973463	1.00[EUR][1000 genomes]
rs939464	1.00[MEX][hapmap]
rs952631	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124357000-124360200	Weak transcription	Pancreas	Pancrea

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