Variant report
| Variant | rs60509888 |
|---|---|
| Chromosome Location | chr12:124323081-124323082 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:124312941..124315682-chr12:124321036..124323977,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11833681 | 1.00[EUR][1000 genomes] |
| rs11835416 | 1.00[EUR][1000 genomes] |
| rs11836598 | 1.00[EUR][1000 genomes] |
| rs56025259 | 1.00[EUR][1000 genomes] |
| rs56096831 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57024764 | 1.00[EUR][1000 genomes] |
| rs57861885 | 1.00[EUR][1000 genomes] |
| rs58292766 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59107032 | 1.00[EUR][1000 genomes] |
| rs59540041 | 1.00[EUR][1000 genomes] |
| rs59689888 | 1.00[EUR][1000 genomes] |
| rs60422087 | 1.00[EUR][1000 genomes] |
| rs60571579 | 1.00[EUR][1000 genomes] |
| rs60654678 | 1.00[EUR][1000 genomes] |
| rs60890562 | 1.00[EUR][1000 genomes] |
| rs61174884 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61231375 | 1.00[EUR][1000 genomes] |
| rs61730202 | 1.00[EUR][1000 genomes] |
| rs61735933 | 1.00[EUR][1000 genomes] |
| rs7135932 | 1.00[EUR][1000 genomes] |
| rs7296360 | 1.00[EUR][1000 genomes] |
| rs73409432 | 1.00[EUR][1000 genomes] |
| rs73420341 | 1.00[EUR][1000 genomes] |
| rs73420349 | 1.00[EUR][1000 genomes] |
| rs73420352 | 1.00[EUR][1000 genomes] |
| rs7962743 | 1.00[EUR][1000 genomes] |
| rs7962913 | 1.00[EUR][1000 genomes] |
| rs7973463 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498024 | chr12:123994372-124459856 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:124320400-124325800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
