Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr12:75061828-75062041	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000188646	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10506688	0.90[EUR][1000 genomes]
rs11180146	1.00[EUR][1000 genomes]
rs11180186	0.95[EUR][1000 genomes]
rs11837536	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12297382	0.95[EUR][1000 genomes]
rs12302658	0.95[EUR][1000 genomes]
rs12315155	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12319938	0.95[EUR][1000 genomes]
rs12321065	0.95[EUR][1000 genomes]
rs1508157	0.90[EUR][1000 genomes]
rs17114150	0.95[EUR][1000 genomes]
rs17185333	0.95[EUR][1000 genomes]
rs17789260	0.95[EUR][1000 genomes]
rs2102409	1.00[EUR][1000 genomes]
rs55723402	0.95[EUR][1000 genomes]
rs55916036	0.85[EUR][1000 genomes]
rs55928489	0.95[EUR][1000 genomes]
rs55983122	0.90[EUR][1000 genomes]
rs56263223	0.95[EUR][1000 genomes]
rs60341073	0.95[EUR][1000 genomes]
rs74107525	0.95[EUR][1000 genomes]
rs74107526	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899297	chr12:75045728-75169675	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899298	chr12:75045728-75173289	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv427915	chr12:75047293-75172692	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75061600-75062000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:75061600-75062000	Enhancers	NH-A	brain

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