Variant report

Variant	rs12319938
Chromosome Location	chr12:75094327-75094328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10506688	0.95[EUR][1000 genomes]
rs11180146	0.95[EUR][1000 genomes]
rs11180186	1.00[EUR][1000 genomes]
rs11835913	0.95[EUR][1000 genomes]
rs11837536	0.95[EUR][1000 genomes]
rs12297382	1.00[EUR][1000 genomes]
rs12302658	1.00[EUR][1000 genomes]
rs12315155	1.00[EUR][1000 genomes]
rs12321065	1.00[EUR][1000 genomes]
rs1508157	0.95[EUR][1000 genomes]
rs17114150	1.00[EUR][1000 genomes]
rs17185333	1.00[EUR][1000 genomes]
rs17789260	1.00[EUR][1000 genomes]
rs2102409	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55723402	1.00[EUR][1000 genomes]
rs55916036	0.90[EUR][1000 genomes]
rs55928489	1.00[EUR][1000 genomes]
rs55983122	0.95[EUR][1000 genomes]
rs56263223	1.00[EUR][1000 genomes]
rs60341073	1.00[EUR][1000 genomes]
rs7314970	0.82[ASN][1000 genomes]
rs74107137	0.82[ASN][1000 genomes]
rs74107525	1.00[EUR][1000 genomes]
rs74107526	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899297	chr12:75045728-75169675	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899298	chr12:75045728-75173289	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv427915	chr12:75047293-75172692	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832460	chr12:75082963-75260727	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv973202	chr12:75092726-75103510	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv983441	chr12:75092726-75110190	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75092400-75095200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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