Variant report
| Variant | rs11837536 |
|---|---|
| Chromosome Location | chr12:75081878-75081879 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:74931373..74934203-chr12:75080522..75082837,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000257386 | Chromatin interaction |
| ENSG00000253719 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10506688 | 0.90[EUR][1000 genomes] |
| rs11180146 | 1.00[EUR][1000 genomes] |
| rs11180186 | 0.95[EUR][1000 genomes] |
| rs11835913 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12297382 | 0.95[EUR][1000 genomes] |
| rs12302658 | 0.95[EUR][1000 genomes] |
| rs12315155 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs12319938 | 0.95[EUR][1000 genomes] |
| rs12321065 | 0.95[EUR][1000 genomes] |
| rs1508157 | 0.90[EUR][1000 genomes] |
| rs17114150 | 0.95[EUR][1000 genomes] |
| rs17185333 | 0.95[EUR][1000 genomes] |
| rs17789260 | 0.95[EUR][1000 genomes] |
| rs2102409 | 1.00[EUR][1000 genomes] |
| rs55723402 | 0.95[EUR][1000 genomes] |
| rs55916036 | 0.85[EUR][1000 genomes] |
| rs55928489 | 0.95[EUR][1000 genomes] |
| rs55983122 | 0.90[EUR][1000 genomes] |
| rs56263223 | 0.95[EUR][1000 genomes] |
| rs60341073 | 0.95[EUR][1000 genomes] |
| rs74107525 | 0.95[EUR][1000 genomes] |
| rs74107526 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899297 | chr12:75045728-75169675 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv899298 | chr12:75045728-75173289 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv427915 | chr12:75047293-75172692 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
