Variant report

Variant	rs11838259
Chromosome Location	chr12:41535464-41535465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11180478	0.82[EUR][1000 genomes]
rs11180566	0.80[EUR][1000 genomes]
rs11180567	0.80[EUR][1000 genomes]
rs11180626	0.80[EUR][1000 genomes]
rs11180634	0.80[EUR][1000 genomes]
rs12300590	0.80[EUR][1000 genomes]
rs12300840	0.80[EUR][1000 genomes]
rs12300884	0.80[EUR][1000 genomes]
rs12300953	0.80[EUR][1000 genomes]
rs12302094	0.80[EUR][1000 genomes]
rs12304516	0.82[EUR][1000 genomes]
rs12305252	0.82[EUR][1000 genomes]
rs12305924	0.80[EUR][1000 genomes]
rs12306285	0.80[EUR][1000 genomes]
rs12307937	0.80[EUR][1000 genomes]
rs12310793	0.80[EUR][1000 genomes]
rs12310860	0.82[EUR][1000 genomes]
rs12313636	1.00[CEU][hapmap]
rs12315362	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12315979	0.80[EUR][1000 genomes]
rs13377633	0.84[EUR][1000 genomes]
rs1367606	0.80[EUR][1000 genomes]
rs1431125	0.80[EUR][1000 genomes]
rs1431126	0.80[EUR][1000 genomes]
rs2217492	0.80[EUR][1000 genomes]
rs2405771	0.84[EUR][1000 genomes]
rs3858730	0.80[EUR][1000 genomes]
rs67832493	0.80[EUR][1000 genomes]
rs73268788	0.82[EUR][1000 genomes]
rs73279870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281725	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv428587	chr12:41375635-41546845	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1051524	chr12:41409977-41643387	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1048124	chr12:41499221-41585315	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
6	nsv684	chr12:41499912-41545039	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
7	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2760256	chr12:41525540-41542361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41533800-41536200	Enhancers	Rectal Smooth Muscle	rectum
2	chr12:41534800-41538600	Weak transcription	Aorta	Aorta
3	chr12:41535200-41535800	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links