Variant report

Variant	rs11841168
Chromosome Location	chr13:30874638-30874639
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30873008..30875722-chr13:30880790..30883430,2	K562	blood:
2	chr13:30872669..30876124-chr13:30878338..30881739,3	MCF-7	breast:
3	chr13:30874478..30877228-chr13:30887238..30890172,2	K562	blood:
4	chr13:30869127..30871838-chr13:30872308..30874862,2	K562	blood:
5	chr13:30874205..30876295-chr13:30876523..30878862,2	K562	blood:

Variant related genes	Relation type
ENSG00000215049	Chromatin interaction
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11839528	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs202086	0.82[CHB][hapmap]
rs202087	0.82[CHB][hapmap]
rs202092	0.82[CHB][hapmap]
rs624552	0.82[CHB][hapmap]
rs645899	0.82[CHB][hapmap]
rs651612	0.82[CHB][hapmap]
rs7320179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs846489	0.82[CHB][hapmap]
rs846491	0.82[CHB][hapmap]
rs9508682	1.00[CHB][hapmap]
rs9508686	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9508687	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9508689	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30843000-30880200	Weak transcription	Fetal Stomach	stomach
2	chr13:30847200-30876000	Weak transcription	Lung	lung
3	chr13:30854000-30876800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr13:30855200-30877200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr13:30856000-30877400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:30859800-30875600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr13:30859800-30879600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:30861000-30880800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:30861200-30878200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:30864000-30878200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:30864400-30875600	Weak transcription	NHEK	skin
12	chr13:30864400-30879000	Weak transcription	Colon Smooth Muscle	Colon
13	chr13:30864400-30879800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:30865200-30879200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr13:30866800-30880800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:30867000-30877200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr13:30867000-30877400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr13:30867200-30877200	Weak transcription	HepG2	liver
19	chr13:30868400-30880800	Weak transcription	Left Ventricle	heart
20	chr13:30868800-30876000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr13:30869000-30877400	Weak transcription	Fetal Thymus	thymus
22	chr13:30869000-30878000	Weak transcription	K562	blood
23	chr13:30869400-30878800	Weak transcription	Brain Anterior Caudate	brain
24	chr13:30869600-30876800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr13:30869600-30879400	Weak transcription	Brain Substantia Nigra	brain
26	chr13:30869800-30875600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:30870800-30880400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr13:30871000-30875400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr13:30871000-30878000	Weak transcription	Thymus	Thymus
30	chr13:30871000-30880400	Weak transcription	Fetal Intestine Small	intestine
31	chr13:30871000-30880400	Weak transcription	Right Ventricle	heart
32	chr13:30871200-30876000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr13:30872400-30876000	Weak transcription	Primary B cells from cord blood	blood
34	chr13:30873600-30878200	Enhancers	Osteobl	bone
35	chr13:30873800-30875000	Enhancers	HSMM	muscle
36	chr13:30873800-30875400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr13:30873800-30876000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr13:30873800-30876400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr13:30873800-30876600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr13:30873800-30877000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr13:30873800-30877000	Enhancers	NH-A	brain
42	chr13:30873800-30878200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr13:30873800-30878200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr13:30873800-30878800	Enhancers	NHLF	lung
45	chr13:30873800-30879200	Enhancers	NHDF-Ad	bronchial
46	chr13:30873800-30879400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr13:30873800-30879600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr13:30874000-30877000	Enhancers	Dnd41	blood
49	chr13:30874200-30874800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr13:30874200-30874800	Enhancers	Fetal Brain Female	brain

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