Variant report

Variant	rs7320179
Chromosome Location	chr13:30858241-30858242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30856428..30858941-chr13:31030310..31031836,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11839528	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs202092	0.83[ASN][1000 genomes]
rs624552	0.87[ASN][1000 genomes]
rs645899	0.83[ASN][1000 genomes]
rs651612	0.83[ASN][1000 genomes]
rs846489	0.87[ASN][1000 genomes]
rs846491	0.87[ASN][1000 genomes]
rs9508683	0.83[ASN][1000 genomes]
rs9508686	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9508687	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9508689	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899962	chr13:30831422-30863235	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30826800-30860400	Weak transcription	Esophagus	oesophagus
2	chr13:30832200-30861000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:30832200-30863400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:30832200-30863800	Weak transcription	HSMMtube	muscle
5	chr13:30832400-30859400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr13:30837800-30860000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:30840400-30859800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:30842400-30863800	Weak transcription	Ovary	ovary
9	chr13:30843000-30880200	Weak transcription	Fetal Stomach	stomach
10	chr13:30845200-30866200	Weak transcription	Small Intestine	intestine
11	chr13:30845600-30863400	Weak transcription	K562	blood
12	chr13:30847000-30859800	Weak transcription	Brain Germinal Matrix	brain
13	chr13:30847200-30859400	Weak transcription	Brain Anterior Caudate	brain
14	chr13:30847200-30860400	Weak transcription	Brain Substantia Nigra	brain
15	chr13:30847200-30876000	Weak transcription	Lung	lung
16	chr13:30847400-30860800	Weak transcription	Spleen	Spleen
17	chr13:30847400-30867800	Weak transcription	Right Ventricle	heart
18	chr13:30847400-30870200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:30848000-30862600	Weak transcription	HepG2	liver
20	chr13:30849000-30862800	Weak transcription	Fetal Heart	heart
21	chr13:30849400-30859400	Weak transcription	Aorta	Aorta
22	chr13:30849600-30858400	Weak transcription	Fetal Muscle Leg	muscle
23	chr13:30849600-30858800	Weak transcription	GM12878-XiMat	blood
24	chr13:30849600-30860800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr13:30849600-30862800	Weak transcription	Fetal Lung	lung
26	chr13:30849600-30866000	Weak transcription	Thymus	Thymus
27	chr13:30849800-30860400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr13:30849800-30870200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr13:30850000-30860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr13:30850600-30859400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr13:30850800-30862200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr13:30850800-30872000	Weak transcription	Primary B cells from cord blood	blood
33	chr13:30851000-30867400	Weak transcription	Primary T cells from cord blood	blood
34	chr13:30851200-30859000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr13:30851600-30863600	Weak transcription	NHEK	skin
36	chr13:30851800-30874200	Weak transcription	HUVEC	blood vessel
37	chr13:30852200-30860000	Weak transcription	Brain Hippocampus Middle	brain
38	chr13:30852200-30865200	Weak transcription	Fetal Intestine Large	intestine
39	chr13:30852400-30860400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr13:30852400-30863400	Weak transcription	Brain Angular Gyrus	brain
41	chr13:30853000-30862800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr13:30853800-30859800	Weak transcription	Liver	Liver
43	chr13:30853800-30860400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr13:30853800-30862200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr13:30853800-30863400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr13:30854000-30863200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr13:30854000-30863400	Weak transcription	NHLF	lung
48	chr13:30854000-30866200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:30854000-30870200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr13:30854000-30876800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links