Variant report

Variant	rs11842003
Chromosome Location	chr13:92802891-92802892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1360390	1.00[JPT][hapmap]
rs1360391	1.00[JPT][hapmap]
rs1360392	1.00[JPT][hapmap]
rs1360393	1.00[JPT][hapmap]
rs2148523	1.00[JPT][hapmap]
rs3803208	1.00[JPT][hapmap]
rs7333645	1.00[JPT][hapmap]
rs7335555	1.00[JPT][hapmap]
rs7981670	1.00[JPT][hapmap]
rs7991537	1.00[JPT][hapmap]
rs9301783	1.00[JPT][hapmap]
rs9560960	1.00[JPT][hapmap]
rs9560961	1.00[JPT][hapmap]
rs9560972	1.00[JPT][hapmap]
rs9560973	1.00[JPT][hapmap]
rs9560974	1.00[JPT][hapmap]
rs9560977	1.00[JPT][hapmap]
rs9560981	1.00[JPT][hapmap]
rs9560995	1.00[JPT][hapmap]
rs9560997	1.00[JPT][hapmap]
rs9583999	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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