Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10467331	0.94[YRI][hapmap]
rs11842003	1.00[JPT][hapmap]
rs1330997	0.87[YRI][hapmap]
rs1330998	0.86[YRI][hapmap]
rs1330999	0.82[YRI][hapmap]
rs1331000	0.88[YRI][hapmap]
rs1360390	1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360391	1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360392	1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360393	1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148523	1.00[JPT][hapmap]
rs3803208	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7333645	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335555	1.00[JPT][hapmap]
rs7335648	0.88[YRI][hapmap]
rs7991537	1.00[JPT][hapmap]
rs7995221	1.00[ASN][1000 genomes]
rs9301783	1.00[JPT][hapmap]
rs9301784	0.88[YRI][hapmap]
rs9301785	0.86[YRI][hapmap]
rs9560960	1.00[JPT][hapmap]
rs9560961	1.00[JPT][hapmap]
rs9560972	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560973	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560974	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560977	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560981	1.00[JPT][hapmap]
rs9560995	1.00[JPT][hapmap]
rs9560997	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9583999	1.00[JPT][hapmap]
rs9589452	0.88[YRI][hapmap]
rs9589455	0.94[YRI][hapmap]
rs9805190	1.00[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92863800-92870800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:92864000-92870600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:92864000-92871200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:92865200-92867200	Enhancers	Fetal Lung	lung
5	chr13:92865600-92866800	Weak transcription	Ovary	ovary
6	chr13:92865800-92866800	Weak transcription	Fetal Intestine Large	intestine
7	chr13:92866000-92868200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search: