Variant report

Variant	rs10467331
Chromosome Location	chr13:92865189-92865190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1331000	0.94[YRI][hapmap]
rs1360390	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs1360391	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs1360392	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs1360393	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs28640939	0.91[AFR][1000 genomes]
rs7335648	0.94[YRI][hapmap]
rs7981670	0.94[YRI][hapmap]
rs9301784	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs9301785	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs9589452	0.94[YRI][hapmap]
rs9589455	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9805190	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92863800-92870800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:92864000-92870600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:92864000-92871200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:92865000-92865200	Enhancers	Ovary	ovary
5	chr13:92865000-92865800	Enhancers	Fetal Intestine Small	intestine
6	chr13:92865000-92866000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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