Variant report

Variant	rs1360392
Chromosome Location	chr13:92864429-92864430
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10467331	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs11842003	1.00[JPT][hapmap]
rs1330996	0.86[MKK][hapmap]
rs1330998	0.81[YRI][hapmap]
rs1331000	1.00[YRI][hapmap]
rs1360388	0.86[ASW][hapmap]
rs1360390	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360391	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360393	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148523	1.00[JPT][hapmap]
rs28640939	0.81[AFR][1000 genomes]
rs3803208	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7333645	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335555	1.00[JPT][hapmap]
rs7335648	1.00[YRI][hapmap]
rs7981670	1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991537	1.00[JPT][hapmap]
rs7995221	1.00[ASN][1000 genomes]
rs9301783	0.83[GIH][hapmap];1.00[JPT][hapmap]
rs9301784	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9301785	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9560960	1.00[JPT][hapmap]
rs9560961	1.00[JPT][hapmap]
rs9560972	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560973	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560974	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560977	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560981	1.00[JPT][hapmap]
rs9560995	1.00[JPT][hapmap]
rs9560997	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9583999	1.00[JPT][hapmap]
rs9589452	1.00[YRI][hapmap]
rs9589455	0.92[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92863800-92870800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:92864000-92870600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:92864000-92871200	Weak transcription	H1 Cell Line	embryonic stem cell

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