Variant report

Variant	rs11842720
Chromosome Location	chr13:29591970-29591971
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11618690	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11618708	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17571928	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17650122	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs186586	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1923519	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2475538	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2479757	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2987336	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3011022	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs326507	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs326508	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4377014	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4768993	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4768994	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4769659	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4769666	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56023620	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59155661	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7329021	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7986484	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7992303	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7994188	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7999249	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7999733	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7999783	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8000492	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8001303	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9506074	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9508224	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9508229	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9508231	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9508232	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9579260	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9579264	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29585000-29609600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:29589400-29599000	Weak transcription	Aorta	Aorta
3	chr13:29591200-29592600	Enhancers	Fetal Heart	heart

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