Variant report

Variant	rs1923519
Chromosome Location	chr13:29617681-29617682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11618690	0.82[AMR][1000 genomes]
rs11618708	0.82[AMR][1000 genomes]
rs11842720	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17571928	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs186586	0.83[EUR][1000 genomes]
rs2475538	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2479757	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2987336	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3011022	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs326507	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs326508	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4377014	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4768993	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768994	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4769659	0.82[AMR][1000 genomes]
rs4769666	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7992303	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7994188	0.82[AMR][1000 genomes]
rs7999733	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9506074	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9508224	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9508229	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508231	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9508232	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9579260	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9579264	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv983571	chr13:29613684-29619812	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29606200-29623600	Weak transcription	Aorta	Aorta
2	chr13:29612400-29633600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:29613600-29619200	Weak transcription	Fetal Heart	heart

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