Variant report

Variant	rs9508224
Chromosome Location	chr13:29592911-29592912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11842720	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1923519	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4768993	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4768994	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4769666	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7999733	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9506074	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9508229	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9508231	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9508232	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9579260	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9579264	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29585000-29609600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:29589400-29599000	Weak transcription	Aorta	Aorta
3	chr13:29592600-29593000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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