Variant report

Variant	rs11843328
Chromosome Location	chr13:61776739-61776740
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11840132	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56332463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58084109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74080257	1.00[EUR][1000 genomes]
rs74080258	1.00[EUR][1000 genomes]
rs74080259	1.00[EUR][1000 genomes]
rs74080262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74080573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74080577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74080607	1.00[EUR][1000 genomes]
rs74080634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74080934	1.00[EUR][1000 genomes]
rs74080980	1.00[EUR][1000 genomes]
rs74080991	1.00[EUR][1000 genomes]
rs74083406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7991544	1.00[EUR][1000 genomes]
rs7995606	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900244	chr13:61769349-61856666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61776000-61776800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61776200-61777000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:61776400-61777000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links