Variant report

Variant	rs74080991
Chromosome Location	chr13:61826239-61826240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11840132	1.00[EUR][1000 genomes]
rs11843328	1.00[EUR][1000 genomes]
rs56332463	1.00[EUR][1000 genomes]
rs58084109	1.00[EUR][1000 genomes]
rs74080257	1.00[EUR][1000 genomes]
rs74080258	1.00[EUR][1000 genomes]
rs74080259	1.00[EUR][1000 genomes]
rs74080262	1.00[EUR][1000 genomes]
rs74080573	1.00[EUR][1000 genomes]
rs74080577	1.00[EUR][1000 genomes]
rs74080607	1.00[EUR][1000 genomes]
rs74080634	1.00[EUR][1000 genomes]
rs74080934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74080980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74083406	1.00[EUR][1000 genomes]
rs7991544	1.00[EUR][1000 genomes]
rs7995606	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900244	chr13:61769349-61856666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61825800-61826600	Enhancers	Fetal Lung	lung
2	chr13:61826200-61827000	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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