Variant report

Variant	rs74080980
Chromosome Location	chr13:61821684-61821685
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11840132	1.00[EUR][1000 genomes]
rs11843328	1.00[EUR][1000 genomes]
rs56332463	1.00[EUR][1000 genomes]
rs58084109	1.00[EUR][1000 genomes]
rs74080257	1.00[EUR][1000 genomes]
rs74080258	1.00[EUR][1000 genomes]
rs74080259	1.00[EUR][1000 genomes]
rs74080262	1.00[EUR][1000 genomes]
rs74080573	1.00[EUR][1000 genomes]
rs74080577	1.00[EUR][1000 genomes]
rs74080607	1.00[EUR][1000 genomes]
rs74080634	1.00[EUR][1000 genomes]
rs74080934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74080991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74083406	1.00[EUR][1000 genomes]
rs7991544	1.00[EUR][1000 genomes]
rs7995606	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900244	chr13:61769349-61856666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61820200-61822200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:61820600-61821800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr13:61820800-61821800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:61820800-61821800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:61821000-61822000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr13:61821200-61821800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:61821200-61821800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:61821200-61822200	Enhancers	GM12878-XiMat	blood
9	chr13:61821400-61821800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:61821400-61822000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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