Variant report

Variant	rs11846783
Chromosome Location	chr14:71177650-71177651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71131895..71134522-chr14:71177148..71179361,2	MCF-7	breast:
2	chr14:71108009..71109875-chr14:71177091..71179154,2	MCF-7	breast:
3	chr14:71132212..71134545-chr14:71176290..71178585,2	MCF-7	breast:
4	chr14:71167340..71170123-chr14:71176805..71178816,2	MCF-7	breast:
5	chr14:71163577..71165090-chr14:71176784..71178332,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245466	Chromatin interaction
ENSG00000133985	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11625958	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11844774	0.88[ASN][1000 genomes]
rs3742848	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4902841	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573977	0.91[ASN][1000 genomes]
rs7156271	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8010714	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8021668	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71143000-71177800	Weak transcription	Primary B cells from cord blood	blood
2	chr14:71165400-71180000	Weak transcription	Aorta	Aorta
3	chr14:71168400-71181000	Weak transcription	Left Ventricle	heart
4	chr14:71174200-71179800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:71174400-71179600	Weak transcription	Spleen	Spleen
6	chr14:71174400-71179800	Weak transcription	Gastric	stomach
7	chr14:71174600-71180000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:71174600-71180200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:71174600-71185600	Weak transcription	Lung	lung
10	chr14:71175800-71180600	Enhancers	Brain Germinal Matrix	brain
11	chr14:71176200-71180000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:71176600-71177800	Enhancers	GM12878-XiMat	blood
13	chr14:71176600-71178600	Enhancers	Primary B cells from peripheral blood	blood
14	chr14:71176800-71180000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:71176800-71180200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:71177000-71178000	Weak transcription	Fetal Brain Male	brain
17	chr14:71177000-71180000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:71177000-71182200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:71177200-71179200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:71177200-71179600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr14:71177200-71179600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr14:71177200-71179600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:71177200-71179600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr14:71177200-71179600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:71177200-71179800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr14:71177200-71179800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:71177200-71180000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:71177200-71180200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr14:71177200-71180200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:71177200-71183200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:71177200-71185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:71177200-71195600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:71177400-71179600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:71177400-71183200	Weak transcription	NHEK	skin
35	chr14:71177400-71183600	Weak transcription	HMEC	breast
36	chr14:71177400-71183800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:71177600-71179800	Weak transcription	HepG2	liver

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