Variant report

Variant	rs8021668
Chromosome Location	chr14:71188597-71188598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71108025..71109964-chr14:71186845..71189573,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133985	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10483834	0.81[LWK][hapmap]
rs11625958	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11844774	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11846783	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3742848	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902841	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902857	0.81[LWK][hapmap]
rs6573977	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7156271	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010714	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71177200-71195600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:71178600-71189800	Weak transcription	Fetal Brain Female	brain
3	chr14:71179800-71193200	Weak transcription	Right Atrium	heart
4	chr14:71180600-71193800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:71180600-71196800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:71180600-71196800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:71180800-71193600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:71180800-71196000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:71180800-71200800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:71181000-71188600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:71181200-71195800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:71183200-71190200	Enhancers	Fetal Intestine Small	intestine
13	chr14:71183200-71192200	Enhancers	Fetal Intestine Large	intestine
14	chr14:71183800-71189600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:71184400-71194400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:71185400-71198800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:71185800-71196400	Weak transcription	Colonic Mucosa	Colon
18	chr14:71185800-71196600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:71185800-71198600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:71185800-71219200	Weak transcription	Stomach Mucosa	stomach
21	chr14:71186000-71188600	Weak transcription	HSMMtube	muscle
22	chr14:71186000-71190000	Weak transcription	Placenta	Placenta
23	chr14:71186000-71190600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:71186000-71190600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:71186000-71195400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:71186000-71195600	Weak transcription	Pancreas	Pancrea
27	chr14:71186000-71196600	Weak transcription	Gastric	stomach
28	chr14:71186000-71196600	Weak transcription	Lung	lung
29	chr14:71186000-71221600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:71186000-71221600	Weak transcription	Hela-S3	cervix
31	chr14:71186200-71190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:71186600-71189800	Weak transcription	Esophagus	oesophagus
33	chr14:71187400-71190000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr14:71187600-71188600	Enhancers	Adipose Nuclei	Adipose
35	chr14:71187800-71188600	Enhancers	Liver	Liver
36	chr14:71187800-71188800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr14:71187800-71188800	Genic enhancers	HMEC	breast
38	chr14:71188000-71188800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr14:71188000-71188800	Active TSS	Spleen	Spleen
40	chr14:71188000-71189000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:71188000-71190200	Enhancers	HepG2	liver
42	chr14:71188000-71196800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr14:71188200-71188600	Enhancers	NHEK	skin
44	chr14:71188200-71188800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:71188200-71188800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:71188200-71188800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr14:71188400-71188600	Enhancers	H1 Cell Line	embryonic stem cell
48	chr14:71188400-71188800	Enhancers	Psoas Muscle	Psoas
49	chr14:71188400-71188800	Bivalent Enhancer	HSMM	muscle
50	chr14:71188400-71189800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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