Variant report

Variant	rs6573977
Chromosome Location	chr14:71189197-71189198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71188747..71190799-chr14:71193873..71196833,2	MCF-7	breast:
2	chr14:71108025..71109964-chr14:71186845..71189573,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133985	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11625958	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11844774	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11846783	0.91[ASN][1000 genomes]
rs3742848	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902841	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7156271	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8010714	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8021668	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71177200-71195600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:71178600-71189800	Weak transcription	Fetal Brain Female	brain
3	chr14:71179800-71193200	Weak transcription	Right Atrium	heart
4	chr14:71180600-71193800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:71180600-71196800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:71180600-71196800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:71180800-71193600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:71180800-71196000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:71180800-71200800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:71181200-71195800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:71183200-71190200	Enhancers	Fetal Intestine Small	intestine
12	chr14:71183200-71192200	Enhancers	Fetal Intestine Large	intestine
13	chr14:71183800-71189600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:71184400-71194400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:71185400-71198800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:71185800-71196400	Weak transcription	Colonic Mucosa	Colon
17	chr14:71185800-71196600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:71185800-71198600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:71185800-71219200	Weak transcription	Stomach Mucosa	stomach
20	chr14:71186000-71190000	Weak transcription	Placenta	Placenta
21	chr14:71186000-71190600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:71186000-71190600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:71186000-71195400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:71186000-71195600	Weak transcription	Pancreas	Pancrea
25	chr14:71186000-71196600	Weak transcription	Gastric	stomach
26	chr14:71186000-71196600	Weak transcription	Lung	lung
27	chr14:71186000-71221600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr14:71186000-71221600	Weak transcription	Hela-S3	cervix
29	chr14:71186200-71190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:71186600-71189800	Weak transcription	Esophagus	oesophagus
31	chr14:71187400-71190000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr14:71188000-71190200	Enhancers	HepG2	liver
33	chr14:71188000-71196800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:71188400-71189800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:71188400-71190400	Enhancers	A549	lung
36	chr14:71188600-71190600	Weak transcription	NHEK	skin
37	chr14:71188600-71193200	Weak transcription	Adipose Nuclei	Adipose
38	chr14:71188600-71195600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr14:71188600-71198600	Weak transcription	Liver	Liver
40	chr14:71188800-71189800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:71188800-71190800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr14:71188800-71191200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr14:71188800-71192800	Weak transcription	Psoas Muscle	Psoas
44	chr14:71188800-71193400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:71188800-71194200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:71188800-71198400	Strong transcription	HMEC	breast

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