Variant report
Variant | rs11847241 |
---|---|
Chromosome Location | chr14:35100880-35100881 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000165410 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10129588 | 0.81[EUR][1000 genomes] |
rs10130504 | 0.85[CEU][hapmap] |
rs10134877 | 0.93[YRI][hapmap] |
rs10134991 | 0.85[CEU][hapmap] |
rs10140153 | 0.82[ASN][1000 genomes] |
rs10145193 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10150782 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs10151057 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10151255 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10151653 | 0.82[EUR][1000 genomes] |
rs10151959 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10431614 | 0.93[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes] |
rs10872888 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10872889 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs11156848 | 0.85[CEU][hapmap];0.85[TSI][hapmap] |
rs11156851 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11629253 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11847568 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11850430 | 0.84[EUR][1000 genomes] |
rs12147949 | 0.93[CEU][hapmap];0.81[TSI][hapmap] |
rs12431530 | 0.83[EUR][1000 genomes] |
rs12879294 | 0.89[EUR][1000 genomes] |
rs12881535 | 0.85[ASN][1000 genomes] |
rs12883981 | 1.00[CEU][hapmap] |
rs12884300 | 0.85[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs12888994 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs12895457 | 1.00[CEU][hapmap] |
rs28688993 | 0.87[EUR][1000 genomes] |
rs34939235 | 0.85[EUR][1000 genomes] |
rs35239119 | 0.88[EUR][1000 genomes] |
rs36068893 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3809450 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3809451 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3809452 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs3923104 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3958 | 1.00[CEU][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes] |
rs4268668 | 0.93[CEU][hapmap];0.85[TSI][hapmap] |
rs4312221 | 0.95[EUR][1000 genomes] |
rs4347522 | 0.85[EUR][1000 genomes] |
rs4424827 | 0.85[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs4479126 | 0.89[EUR][1000 genomes] |
rs4982192 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4982194 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4982195 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4982196 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4982197 | 0.87[ASN][1000 genomes] |
rs4982198 | 0.85[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs56065726 | 0.84[ASN][1000 genomes] |
rs61553463 | 0.88[EUR][1000 genomes] |
rs61979724 | 0.88[EUR][1000 genomes] |
rs6571668 | 0.85[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs6650498 | 0.88[EUR][1000 genomes] |
rs7144356 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7144711 | 0.92[CEU][hapmap] |
rs7153918 | 0.82[EUR][1000 genomes] |
rs7161203 | 1.00[CEU][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes] |
rs7161260 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72675279 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs8008650 | 0.84[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs8019556 | 0.96[CEU][hapmap];0.82[TSI][hapmap] |
rs8021267 | 0.82[EUR][1000 genomes] |
rs9264 | 1.00[CEU][hapmap] |
rs9635193 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs9652316 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040980 | chr14:34345018-35255592 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 109 gene(s) | inside rSNPs | diseases |
2 | nsv1048408 | chr14:34958352-35255592 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
3 | esv3392700 | chr14:34989406-35365530 | Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 85 gene(s) | inside rSNPs | diseases |
4 | nsv1040303 | chr14:35040853-35101044 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
5 | nsv542027 | chr14:35040853-35101044 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
6 | nsv1038360 | chr14:35040853-35152886 | Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
7 | esv3408652 | chr14:35069966-35110821 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
8 | nsv523334 | chr14:35075022-35131862 | Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
9 | nsv1041857 | chr14:35084889-35417180 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
10 | esv1132950 | chr14:35100365-35101370 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:35099800-35102200 | Enhancers | Fetal Intestine Small | intestine |
2 | chr14:35099800-35103000 | Weak transcription | K562 | blood |
3 | chr14:35099800-35104000 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
4 | chr14:35100000-35101000 | Enhancers | Duodenum Mucosa | Duodenum |
5 | chr14:35100000-35101600 | Weak transcription | Hela-S3 | cervix |
6 | chr14:35100000-35103200 | Weak transcription | A549 | lung |
7 | chr14:35100000-35103200 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
8 | chr14:35100000-35103800 | Weak transcription | NHLF | lung |