Variant report

Variant	rs11850430
Chromosome Location	chr14:35036679-35036680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35031288..35033834-chr14:35035725..35037363,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10129588	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10130504	0.84[ASN][1000 genomes]
rs10134991	0.83[ASN][1000 genomes]
rs10145193	0.83[EUR][1000 genomes]
rs10151057	0.83[EUR][1000 genomes]
rs10151255	0.83[EUR][1000 genomes]
rs10151653	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10151959	0.84[EUR][1000 genomes]
rs11156848	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11156851	0.82[EUR][1000 genomes]
rs11847241	0.84[EUR][1000 genomes]
rs11847568	0.85[EUR][1000 genomes]
rs12879294	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12881595	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34755567	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34939235	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35239119	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36068893	0.83[EUR][1000 genomes]
rs3809450	0.84[EUR][1000 genomes]
rs3809451	0.84[EUR][1000 genomes]
rs3809452	0.83[EUR][1000 genomes]
rs3923104	0.82[EUR][1000 genomes]
rs3958	0.88[EUR][1000 genomes]
rs4312221	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4982192	0.84[EUR][1000 genomes]
rs4982194	0.84[EUR][1000 genomes]
rs4982195	0.84[EUR][1000 genomes]
rs4982196	0.84[EUR][1000 genomes]
rs6571665	0.81[ASN][1000 genomes]
rs7144356	0.83[EUR][1000 genomes]
rs7153918	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7157392	0.81[ASN][1000 genomes]
rs7161203	0.86[EUR][1000 genomes]
rs7161260	0.83[EUR][1000 genomes]
rs8014673	0.84[ASN][1000 genomes]
rs8021267	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9652316	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1049048	chr14:34969406-35048672	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35024000-35040600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:35024200-35039000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:35024200-35041800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:35024200-35046200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:35024400-35037800	Weak transcription	Primary B cells from cord blood	blood
6	chr14:35024400-35038000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:35024400-35038200	Weak transcription	Brain Anterior Caudate	brain
8	chr14:35024400-35040600	Weak transcription	K562	blood
9	chr14:35024400-35053600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:35024400-35056800	Weak transcription	Small Intestine	intestine
11	chr14:35024400-35060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:35024400-35066200	Weak transcription	Stomach Mucosa	stomach
13	chr14:35031400-35042800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:35031400-35047400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:35031400-35052600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr14:35031400-35073400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr14:35031400-35073400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr14:35031400-35078000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr14:35031600-35036800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr14:35031600-35037600	Strong transcription	Adipose Nuclei	Adipose
21	chr14:35031600-35038000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:35031600-35039000	Strong transcription	Duodenum Mucosa	Duodenum
23	chr14:35031600-35039200	Strong transcription	Brain Hippocampus Middle	brain
24	chr14:35031600-35043600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:35031600-35044000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr14:35031600-35045000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:35031600-35045200	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:35031600-35045200	Strong transcription	Placenta	Placenta
29	chr14:35031600-35047200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:35031600-35049800	Strong transcription	Osteobl	bone
31	chr14:35031600-35050600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:35031600-35055800	Strong transcription	Liver	Liver
33	chr14:35031600-35059600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:35031600-35074000	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr14:35031600-35074000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:35031600-35079400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:35031800-35037200	Strong transcription	NHDF-Ad	bronchial
38	chr14:35031800-35039400	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr14:35031800-35043000	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr14:35031800-35044800	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:35031800-35044800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr14:35031800-35045000	Strong transcription	Dnd41	blood
43	chr14:35031800-35063400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr14:35032000-35036800	Strong transcription	Lung	lung
45	chr14:35032000-35038600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:35032000-35039800	Strong transcription	Spleen	Spleen
47	chr14:35032000-35043400	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:35032000-35043800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:35032000-35043800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr14:35032000-35043800	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links