Variant report

Variant	rs34939235
Chromosome Location	chr14:35032168-35032169
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35008837..35010940-chr14:35031466..35034355,2	MCF-7	breast:
2	chr14:35031288..35033834-chr14:35035725..35037363,2	K562	blood:
3	chr14:35009521..35011161-chr14:35031484..35032992,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129518	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10129588	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10130504	0.94[ASN][1000 genomes]
rs10134817	0.81[EUR][1000 genomes]
rs10134991	0.93[ASN][1000 genomes]
rs10145193	0.84[EUR][1000 genomes]
rs10151057	0.84[EUR][1000 genomes]
rs10151255	0.84[EUR][1000 genomes]
rs10151653	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10151959	0.85[EUR][1000 genomes]
rs10431614	0.83[ASN][1000 genomes]
rs10872888	0.80[EUR][1000 genomes]
rs11156848	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11156851	0.83[EUR][1000 genomes]
rs11847241	0.85[EUR][1000 genomes]
rs11847568	0.86[EUR][1000 genomes]
rs11850430	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12431530	0.83[ASN][1000 genomes]
rs12879294	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12881595	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12883981	0.84[EUR][1000 genomes]
rs12895457	0.82[EUR][1000 genomes]
rs34755567	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35239119	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36068893	0.84[EUR][1000 genomes]
rs3809450	0.85[EUR][1000 genomes]
rs3809451	0.85[EUR][1000 genomes]
rs3809452	0.84[EUR][1000 genomes]
rs3923104	0.83[EUR][1000 genomes]
rs3958	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4268668	0.82[EUR][1000 genomes]
rs4312221	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4982192	0.85[EUR][1000 genomes]
rs4982194	0.85[EUR][1000 genomes]
rs4982195	0.85[EUR][1000 genomes]
rs4982196	0.85[EUR][1000 genomes]
rs61553463	0.83[ASN][1000 genomes]
rs61979724	0.83[ASN][1000 genomes]
rs6571665	0.91[ASN][1000 genomes]
rs6650498	0.83[ASN][1000 genomes]
rs71262238	0.83[EUR][1000 genomes]
rs7144356	0.84[EUR][1000 genomes]
rs7151282	0.80[EUR][1000 genomes]
rs7153918	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7157392	0.91[ASN][1000 genomes]
rs7161203	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7161260	0.84[EUR][1000 genomes]
rs72673474	0.88[EUR][1000 genomes]
rs8014673	0.94[ASN][1000 genomes]
rs8021267	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9652316	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1049048	chr14:34969406-35048672	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35009000-35033000	Weak transcription	Gastric	stomach
2	chr14:35017400-35036000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:35023600-35035400	Weak transcription	Aorta	Aorta
4	chr14:35024000-35032200	Weak transcription	Brain Germinal Matrix	brain
5	chr14:35024000-35035400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:35024000-35036000	Weak transcription	Esophagus	oesophagus
7	chr14:35024000-35036200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:35024000-35040600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:35024200-35033200	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:35024200-35035200	Weak transcription	Primary T cells from cord blood	blood
11	chr14:35024200-35035200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:35024200-35036000	Weak transcription	Right Ventricle	heart
13	chr14:35024200-35036400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:35024200-35039000	Weak transcription	Brain Angular Gyrus	brain
15	chr14:35024200-35041800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:35024200-35046200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr14:35024400-35033000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:35024400-35033200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:35024400-35033600	Weak transcription	Fetal Lung	lung
20	chr14:35024400-35034200	Weak transcription	NHLF	lung
21	chr14:35024400-35034600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr14:35024400-35035800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:35024400-35035800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr14:35024400-35035800	Weak transcription	Fetal Kidney	kidney
25	chr14:35024400-35036000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:35024400-35036000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr14:35024400-35036200	Weak transcription	Pancreas	Pancrea
28	chr14:35024400-35037800	Weak transcription	Primary B cells from cord blood	blood
29	chr14:35024400-35038000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:35024400-35038200	Weak transcription	Brain Anterior Caudate	brain
31	chr14:35024400-35040600	Weak transcription	K562	blood
32	chr14:35024400-35053600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr14:35024400-35056800	Weak transcription	Small Intestine	intestine
34	chr14:35024400-35060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:35024400-35066200	Weak transcription	Stomach Mucosa	stomach
36	chr14:35024600-35036600	Weak transcription	Hela-S3	cervix
37	chr14:35028800-35035400	Weak transcription	Fetal Brain Female	brain
38	chr14:35029200-35035400	Weak transcription	HSMMtube	muscle
39	chr14:35030000-35034600	Weak transcription	Fetal Brain Male	brain
40	chr14:35030400-35032200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr14:35030600-35036000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr14:35031400-35033800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:35031400-35042800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:35031400-35047400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:35031400-35052600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr14:35031400-35073400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr14:35031400-35073400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr14:35031400-35078000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr14:35031600-35032400	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr14:35031600-35032400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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