Variant report

Variant	rs11847482
Chromosome Location	chr14:35317641-35317642
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35317397..35319236-chr14:35343103..35345299,2	MCF-7	breast:
2	chr14:35315998..35317972-chr14:35342838..35344533,2	K562	blood:

Variant related genes	Relation type
ENSG00000258738	Chromatin interaction
ENSG00000198604	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11847490	0.95[AFR][1000 genomes]
rs61503336	0.84[AFR][1000 genomes]
rs61612362	0.83[AFR][1000 genomes]
rs7151346	0.82[AFR][1000 genomes]
rs8007282	0.89[AFR][1000 genomes]
rs8020967	0.92[AFR][1000 genomes]
rs8021114	0.92[AFR][1000 genomes]
rs8021608	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35269400-35322200	Weak transcription	Fetal Brain Female	brain
2	chr14:35269400-35341600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:35271800-35326400	Weak transcription	Esophagus	oesophagus
4	chr14:35272400-35333600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:35276200-35342400	Weak transcription	Pancreas	Pancrea
6	chr14:35276400-35329600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:35276400-35330000	Weak transcription	Colonic Mucosa	Colon
8	chr14:35276600-35320000	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:35277200-35322000	Weak transcription	Fetal Intestine Large	intestine
10	chr14:35282600-35323400	Weak transcription	Lung	lung
11	chr14:35292600-35322600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:35292600-35322800	Weak transcription	Thymus	Thymus
13	chr14:35292800-35320200	Weak transcription	Fetal Stomach	stomach
14	chr14:35295000-35322800	Weak transcription	Fetal Intestine Small	intestine
15	chr14:35295200-35327000	Weak transcription	Spleen	Spleen
16	chr14:35296200-35321600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:35303800-35321600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:35304000-35326600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr14:35304400-35319800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:35307000-35321000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:35307000-35333800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:35307400-35322000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr14:35308600-35322000	Weak transcription	Liver	Liver
24	chr14:35308600-35322200	Weak transcription	Fetal Lung	lung
25	chr14:35312200-35336200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr14:35312400-35326400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:35312600-35320000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr14:35312600-35321600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:35312600-35325800	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:35312600-35328600	Weak transcription	Fetal Kidney	kidney
31	chr14:35312600-35335200	Weak transcription	Right Ventricle	heart
32	chr14:35312800-35318200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr14:35312800-35319000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:35312800-35320200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:35312800-35320200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr14:35312800-35320200	Weak transcription	Osteobl	bone
37	chr14:35312800-35320400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:35312800-35321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:35312800-35321800	Weak transcription	NH-A	brain
40	chr14:35312800-35322000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:35312800-35322000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:35312800-35322000	Weak transcription	HSMM	muscle
43	chr14:35312800-35322000	Weak transcription	HSMMtube	muscle
44	chr14:35312800-35322200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr14:35312800-35322200	Weak transcription	Placenta	Placenta
46	chr14:35312800-35322400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:35312800-35322400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr14:35312800-35323000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr14:35312800-35324400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:35312800-35325200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links