Variant report

Variant	rs8021114
Chromosome Location	chr14:35296665-35296666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35294810..35298039-chr14:35300530..35302968,3	K562	blood:
2	chr14:35294810..35296955-chr14:35300530..35302325,3	K562	blood:
3	chr14:35289257..35291894-chr14:35296561..35298664,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11847482	0.92[AFR][1000 genomes]
rs11847490	0.97[AFR][1000 genomes]
rs61503336	0.92[AFR][1000 genomes]
rs61612362	0.90[AFR][1000 genomes]
rs7151346	0.89[AFR][1000 genomes]
rs8007282	0.97[AFR][1000 genomes]
rs8010594	0.81[AFR][1000 genomes]
rs8020967	1.00[AFR][1000 genomes]
rs8021608	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35234200-35311600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:35252200-35301000	Weak transcription	Psoas Muscle	Psoas
3	chr14:35269200-35298000	Weak transcription	Ovary	ovary
4	chr14:35269400-35322200	Weak transcription	Fetal Brain Female	brain
5	chr14:35269400-35341600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:35270400-35303400	Weak transcription	Stomach Mucosa	stomach
7	chr14:35271800-35326400	Weak transcription	Esophagus	oesophagus
8	chr14:35272400-35300200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:35272400-35333600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:35274200-35311800	Weak transcription	HSMMtube	muscle
11	chr14:35274400-35303400	Weak transcription	Left Ventricle	heart
12	chr14:35274400-35312400	Weak transcription	Gastric	stomach
13	chr14:35274800-35312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:35275200-35298000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:35276200-35307200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:35276200-35342400	Weak transcription	Pancreas	Pancrea
17	chr14:35276400-35297800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:35276400-35329600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:35276400-35330000	Weak transcription	Colonic Mucosa	Colon
20	chr14:35276600-35320000	Weak transcription	Fetal Muscle Leg	muscle
21	chr14:35277000-35300600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr14:35277000-35307200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:35277200-35322000	Weak transcription	Fetal Intestine Large	intestine
24	chr14:35282000-35300400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr14:35282200-35300000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:35282600-35300400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:35282600-35323400	Weak transcription	Lung	lung
28	chr14:35285000-35300600	Strong transcription	Dnd41	blood
29	chr14:35285600-35299400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr14:35286600-35298600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:35287000-35298200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr14:35287600-35299400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr14:35287800-35298200	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr14:35288000-35298200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:35288400-35298200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:35289000-35298200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:35289000-35298400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:35289400-35297600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr14:35290400-35300600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:35290600-35311800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:35292200-35300600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:35292400-35312200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr14:35292600-35312000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:35292600-35312400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:35292600-35322600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:35292600-35322800	Weak transcription	Thymus	Thymus
47	chr14:35292800-35303200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr14:35292800-35320200	Weak transcription	Fetal Stomach	stomach
49	chr14:35293800-35311800	Weak transcription	NH-A	brain
50	chr14:35294000-35297400	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links