Variant report

Variant	rs61503336
Chromosome Location	chr14:35228641-35228642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35227474..35229033-chr14:35341739..35343496,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CFL2-3	chr14:35228545-35228769	expReg_chr14_2118_-

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11847482	0.84[AFR][1000 genomes]
rs11847490	0.89[AFR][1000 genomes]
rs61612362	0.83[AFR][1000 genomes]
rs7151346	0.92[AFR][1000 genomes]
rs8007282	0.89[AFR][1000 genomes]
rs8010594	0.89[AFR][1000 genomes]
rs8020967	0.92[AFR][1000 genomes]
rs8021114	0.92[AFR][1000 genomes]
rs8021608	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1040350	chr14:35196524-35245409	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1051540	chr14:35200858-35278635	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35216600-35230600	Weak transcription	K562	blood
2	chr14:35218200-35232400	Weak transcription	Psoas Muscle	Psoas
3	chr14:35219200-35230600	Weak transcription	Fetal Kidney	kidney
4	chr14:35219400-35262000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr14:35219400-35267000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:35219600-35229400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr14:35219600-35254600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:35219800-35229200	Weak transcription	NHLF	lung
9	chr14:35219800-35229800	Weak transcription	Small Intestine	intestine
10	chr14:35219800-35231600	Weak transcription	Right Ventricle	heart
11	chr14:35220200-35231000	Weak transcription	Hela-S3	cervix
12	chr14:35220400-35232200	Weak transcription	HSMMtube	muscle
13	chr14:35220800-35229200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:35221000-35230400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:35221000-35234400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:35221000-35234600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:35221000-35253200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr14:35221000-35255800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:35221200-35229200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:35221200-35229400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:35221200-35229800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:35221200-35231000	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:35221200-35233000	Weak transcription	Brain Anterior Caudate	brain
24	chr14:35221200-35262000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr14:35221400-35230600	Weak transcription	Fetal Brain Male	brain
26	chr14:35221400-35234400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:35221400-35234600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:35221400-35234600	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr14:35221400-35280800	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr14:35221600-35234400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr14:35221600-35235400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr14:35221600-35237400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr14:35221600-35237800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:35221600-35255400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:35221600-35258800	Strong transcription	Dnd41	blood
36	chr14:35221600-35274600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr14:35222600-35236200	Strong transcription	Primary T cells from cord blood	blood
38	chr14:35222600-35237200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr14:35222800-35229400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr14:35222800-35229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr14:35222800-35229800	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:35222800-35232200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr14:35223000-35229200	Weak transcription	Brain Germinal Matrix	brain
44	chr14:35223200-35233600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr14:35223400-35230400	Weak transcription	Fetal Heart	heart
46	chr14:35223800-35234400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:35224000-35229800	Weak transcription	Pancreas	Pancrea
48	chr14:35224000-35240400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr14:35224400-35230600	Weak transcription	NHDF-Ad	bronchial
50	chr14:35224400-35234400	Strong transcription	Duodenum Mucosa	Duodenum

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