Variant report
| Variant | rs11848194 |
|---|---|
| Chromosome Location | chr14:85829189-85829190 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10134393 | 1.00[EUR][1000 genomes] |
| rs10136631 | 1.00[EUR][1000 genomes] |
| rs10136758 | 1.00[EUR][1000 genomes] |
| rs10138344 | 1.00[EUR][1000 genomes] |
| rs10141914 | 1.00[EUR][1000 genomes] |
| rs10144184 | 1.00[EUR][1000 genomes] |
| rs11846239 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11850212 | 1.00[EUR][1000 genomes] |
| rs11850250 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12100761 | 1.00[EUR][1000 genomes] |
| rs140614 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17121021 | 1.00[EUR][1000 genomes] |
| rs17121060 | 1.00[EUR][1000 genomes] |
| rs1951394 | 1.00[EUR][1000 genomes] |
| rs2182631 | 1.00[EUR][1000 genomes] |
| rs28402332 | 1.00[EUR][1000 genomes] |
| rs28680491 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28706922 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28729624 | 1.00[EUR][1000 genomes] |
| rs28833867 | 1.00[EUR][1000 genomes] |
| rs28871975 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57802016 | 0.91[AMR][1000 genomes] |
| rs58358811 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59459881 | 1.00[EUR][1000 genomes] |
| rs6574815 | 1.00[EUR][1000 genomes] |
| rs8022920 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9323756 | 1.00[EUR][1000 genomes] |
| rs9972170 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9972174 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9972265 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047924 | chr14:85826280-85868228 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85825200-85829800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr14:85828800-85830200 | Enhancers | Fetal Lung | lung |
