Variant report

Variant	rs11848817
Chromosome Location	chr14:65528892-65528893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65510726..65513439-chr14:65527991..65530135,2	MCF-7	breast:
2	chr14:65528293..65530849-chr14:65531346..65534705,3	K562	blood:

Variant related genes	Relation type
ENSG00000266531	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10130343	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135220	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10142987	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10146165	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10149182	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588378	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28648456	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28886684	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55877000	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55896900	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7151272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152879	0.82[ASN][1000 genomes]
rs73270871	1.00[ASN][1000 genomes]
rs8007110	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8007538	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181931	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
4	chr14:65508200-65530800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr14:65508600-65530800	Weak transcription	NHDF-Ad	bronchial
6	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:65514800-65536200	Weak transcription	Small Intestine	intestine
8	chr14:65515200-65530000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:65519600-65529000	Strong transcription	Fetal Muscle Trunk	muscle
10	chr14:65523000-65538200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr14:65525800-65533200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:65525800-65533200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:65526200-65533400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:65526200-65533400	Strong transcription	Fetal Thymus	thymus
15	chr14:65526400-65533800	Strong transcription	Fetal Stomach	stomach
16	chr14:65526400-65535400	Strong transcription	Fetal Intestine Small	intestine
17	chr14:65527200-65539200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:65527400-65529000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:65527400-65533400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr14:65527400-65538000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:65527400-65539600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:65527400-65540400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr14:65527600-65529400	Strong transcription	Adipose Nuclei	Adipose
24	chr14:65527600-65530200	Strong transcription	Brain Cingulate Gyrus	brain
25	chr14:65527600-65530800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr14:65527600-65531000	Strong transcription	Placenta	Placenta
27	chr14:65527600-65531400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr14:65527600-65532400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr14:65527600-65532400	Strong transcription	K562	blood
30	chr14:65527600-65532800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr14:65527600-65533000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr14:65527600-65533000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:65527600-65533000	Strong transcription	NHLF	lung
34	chr14:65527600-65533200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:65527600-65533200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:65527600-65533200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:65527600-65533200	Strong transcription	Liver	Liver
38	chr14:65527600-65533200	Strong transcription	Brain Substantia Nigra	brain
39	chr14:65527600-65533200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr14:65527600-65533200	Strong transcription	Fetal Lung	lung
41	chr14:65527600-65533200	Strong transcription	A549	lung
42	chr14:65527600-65533200	Strong transcription	GM12878-XiMat	blood
43	chr14:65527600-65538000	Strong transcription	Primary B cells from cord blood	blood
44	chr14:65527600-65540800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr14:65527600-65545600	Strong transcription	Primary T cells from cord blood	blood
46	chr14:65527800-65529000	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr14:65527800-65529600	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr14:65527800-65529600	Strong transcription	Colon Smooth Muscle	Colon
49	chr14:65527800-65529600	Strong transcription	Hela-S3	cervix
50	chr14:65527800-65529800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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