Variant report

Variant	rs28648456
Chromosome Location	chr14:65523392-65523393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65517563..65520454-chr14:65521693..65524951,3	MCF-7	breast:
2	chr14:65521820..65524222-chr14:65777692..65780130,2	K562	blood:

Variant related genes	Relation type
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10130037	0.91[AFR][1000 genomes]
rs10130343	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10135220	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10142987	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146165	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10149182	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11848817	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12101257	0.84[AFR][1000 genomes]
rs12588378	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12590701	0.82[AFR][1000 genomes]
rs1957947	0.82[AFR][1000 genomes]
rs28886684	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55877000	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55896900	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7151272	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73270871	0.94[ASN][1000 genomes]
rs8007110	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8007538	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8181931	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:65483400-65528000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
5	chr14:65502400-65523400	Weak transcription	Right Atrium	heart
6	chr14:65508200-65530800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:65508400-65527800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:65508400-65527800	Weak transcription	Colonic Mucosa	Colon
9	chr14:65508400-65528000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr14:65508600-65530800	Weak transcription	NHDF-Ad	bronchial
11	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:65509600-65528000	Weak transcription	Fetal Kidney	kidney
13	chr14:65510200-65527800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:65511600-65528600	Weak transcription	NH-A	brain
15	chr14:65511800-65527800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:65514600-65527600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:65514600-65527600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr14:65514600-65527600	Weak transcription	GM12878-XiMat	blood
19	chr14:65514800-65527800	Weak transcription	Colon Smooth Muscle	Colon
20	chr14:65514800-65536200	Weak transcription	Small Intestine	intestine
21	chr14:65515200-65528000	Weak transcription	HUVEC	blood vessel
22	chr14:65515200-65528600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:65515200-65530000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:65515400-65527800	Weak transcription	Hela-S3	cervix
25	chr14:65515400-65527800	Weak transcription	NHEK	skin
26	chr14:65515600-65527800	Weak transcription	HMEC	breast
27	chr14:65517200-65524000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr14:65517400-65523600	Weak transcription	Psoas Muscle	Psoas
29	chr14:65517400-65527800	Weak transcription	Stomach Mucosa	stomach
30	chr14:65519000-65526000	Strong transcription	Primary T cells from cord blood	blood
31	chr14:65519200-65524000	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr14:65519200-65524000	Strong transcription	Fetal Intestine Large	intestine
33	chr14:65519400-65524000	Strong transcription	Brain Hippocampus Middle	brain
34	chr14:65519600-65523800	Strong transcription	Fetal Brain Female	brain
35	chr14:65519600-65524000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:65519600-65524000	Strong transcription	Thymus	Thymus
37	chr14:65519600-65524200	Strong transcription	Fetal Muscle Leg	muscle
38	chr14:65519600-65524200	Strong transcription	Fetal Stomach	stomach
39	chr14:65519600-65524400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:65519600-65524800	Strong transcription	HepG2	liver
41	chr14:65519600-65525000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr14:65519600-65526400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr14:65519600-65529000	Strong transcription	Fetal Muscle Trunk	muscle
44	chr14:65519800-65524000	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr14:65520000-65524000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:65520000-65524200	Strong transcription	Fetal Intestine Small	intestine
47	chr14:65520000-65524800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:65520200-65524000	Strong transcription	Duodenum Mucosa	Duodenum
49	chr14:65520800-65524400	Strong transcription	Brain Germinal Matrix	brain
50	chr14:65521000-65524000	Strong transcription	Adipose Nuclei	Adipose

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