Variant report

Variant	rs55896900
Chromosome Location	chr14:65533555-65533556
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65530728..65534685-chr14:65538811..65541539,3	K562	blood:
2	chr14:65528293..65530849-chr14:65531346..65534705,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10130343	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10135220	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10142987	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10146165	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10149182	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11848817	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12588378	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28648456	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28886684	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55877000	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151272	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7152879	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73270871	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8007110	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8007538	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8181931	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
4	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:65514800-65536200	Weak transcription	Small Intestine	intestine
6	chr14:65523000-65538200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr14:65526400-65533800	Strong transcription	Fetal Stomach	stomach
8	chr14:65526400-65535400	Strong transcription	Fetal Intestine Small	intestine
9	chr14:65527200-65539200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr14:65527400-65538000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:65527400-65539600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:65527400-65540400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr14:65527600-65538000	Strong transcription	Primary B cells from cord blood	blood
14	chr14:65527600-65540800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr14:65527600-65545600	Strong transcription	Primary T cells from cord blood	blood
16	chr14:65527800-65533600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:65527800-65533600	Strong transcription	Brain Germinal Matrix	brain
18	chr14:65527800-65533600	Strong transcription	Fetal Muscle Leg	muscle
19	chr14:65527800-65534400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr14:65527800-65534400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:65527800-65534400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr14:65527800-65534800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:65527800-65535000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr14:65527800-65536600	Strong transcription	Stomach Smooth Muscle	stomach
25	chr14:65527800-65537600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr14:65527800-65553600	Strong transcription	Dnd41	blood
27	chr14:65528200-65536000	Weak transcription	Psoas Muscle	Psoas
28	chr14:65528200-65536200	Weak transcription	Stomach Mucosa	stomach
29	chr14:65528400-65536200	Weak transcription	Fetal Heart	heart
30	chr14:65528800-65555400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr14:65529600-65537200	Weak transcription	Colon Smooth Muscle	Colon
32	chr14:65529600-65537800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:65529600-65541600	Weak transcription	NH-A	brain
34	chr14:65529800-65536200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr14:65529800-65537400	Strong transcription	Adipose Nuclei	Adipose
36	chr14:65529800-65543000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr14:65530000-65553000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr14:65530400-65539000	Weak transcription	HUVEC	blood vessel
39	chr14:65530400-65543200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr14:65531200-65541400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr14:65531400-65536400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:65531600-65535400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:65532400-65535600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr14:65532400-65537000	Weak transcription	HMEC	breast
45	chr14:65532400-65539200	Weak transcription	K562	blood
46	chr14:65532400-65539600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr14:65532600-65534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:65532600-65538200	Weak transcription	Fetal Kidney	kidney
49	chr14:65532600-65540400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:65532600-65542400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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