Variant report

Variant	rs11849555
Chromosome Location	chr14:79367396-79367397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10873319	1.00[MEX][hapmap]
rs11159386	1.00[MEX][hapmap]
rs11159388	1.00[MEX][hapmap]
rs11159389	1.00[MEX][hapmap]
rs11159390	1.00[MEX][hapmap]
rs11847534	1.00[MEX][hapmap]
rs11849553	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050287	1.00[MEX][hapmap]
rs1605792	0.98[ASN][1000 genomes]
rs66616022	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7142134	1.00[MEX][hapmap]
rs7144101	0.80[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7154350	0.80[GIH][hapmap];1.00[TSI][hapmap]
rs919773	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79365800-79368000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:79365800-79368000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:79365800-79368200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:79366000-79368000	Weak transcription	Brain Anterior Caudate	brain
5	chr14:79366000-79368000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:79366000-79368000	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:79366400-79368000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:79366600-79368200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:79366800-79368000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:79366800-79368200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:79366800-79368200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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