Variant report

Variant	rs7144101
Chromosome Location	chr14:79412455-79412456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10873319	0.93[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.96[YRI][hapmap]
rs11159386	0.86[ASW][hapmap];0.80[CHD][hapmap];1.00[MEX][hapmap]
rs11159388	0.93[ASW][hapmap];0.80[CHD][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs11159389	0.86[ASW][hapmap];0.80[CHD][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.81[AFR][1000 genomes]
rs11159390	0.80[CHD][hapmap];1.00[MEX][hapmap]
rs11845894	0.94[AFR][1000 genomes]
rs11847534	0.80[CHD][hapmap];1.00[MEX][hapmap]
rs11847702	0.81[AFR][1000 genomes]
rs11849200	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11849553	0.82[JPT][hapmap]
rs11849555	0.80[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12050287	0.86[ASW][hapmap];0.80[CHD][hapmap];1.00[MEX][hapmap]
rs12588364	0.80[CHD][hapmap]
rs150773	0.82[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs154331	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs154337	0.85[ASN][1000 genomes]
rs154338	0.85[ASN][1000 genomes]
rs17108397	0.96[YRI][hapmap]
rs17108405	0.93[ASW][hapmap];0.97[LWK][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes]
rs220105	0.85[ASN][1000 genomes]
rs2270964	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap]
rs3792911	0.95[CHB][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs52897	0.85[ASN][1000 genomes]
rs60536854	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60746359	0.94[AFR][1000 genomes]
rs61388877	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7142134	1.00[MEX][hapmap]
rs7142893	1.00[CEU][hapmap]
rs7152596	1.00[CEU][hapmap]
rs7154350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7154492	1.00[CEU][hapmap]
rs74069214	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74069237	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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