Variant report

Variant	rs150773
Chromosome Location	chr14:79398723-79398724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11849200	0.92[ASN][1000 genomes]
rs150774	0.90[CEU][hapmap]
rs150775	0.85[MEX][hapmap]
rs154323	0.90[CEU][hapmap]
rs154324	0.90[CEU][hapmap];0.90[TSI][hapmap]
rs154329	0.90[CEU][hapmap];0.81[CHD][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs154331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154333	0.90[CEU][hapmap];0.81[CHD][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs154334	0.93[EUR][1000 genomes]
rs154336	0.93[EUR][1000 genomes]
rs154337	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154338	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs154340	0.90[CEU][hapmap];0.90[TSI][hapmap]
rs154343	0.90[CEU][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs154376	0.81[CHD][hapmap]
rs154378	0.81[CHD][hapmap]
rs17108401	0.92[EUR][1000 genomes]
rs17108413	0.92[EUR][1000 genomes]
rs220103	0.89[EUR][1000 genomes]
rs220105	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs31351	0.92[EUR][1000 genomes]
rs31436	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs31437	0.90[CEU][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs31444	0.85[MEX][hapmap]
rs31448	0.90[CEU][hapmap];0.90[TSI][hapmap]
rs31450	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs31451	0.85[MEX][hapmap];0.86[AMR][1000 genomes]
rs3817535	0.92[EUR][1000 genomes]
rs52897	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60536854	0.83[ASN][1000 genomes]
rs61388877	0.94[ASN][1000 genomes]
rs7144101	0.82[CHD][hapmap];0.88[JPT][hapmap]
rs7154350	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs74069214	0.97[ASN][1000 genomes]
rs74069237	0.86[ASN][1000 genomes]
rs8007109	0.93[EUR][1000 genomes]
rs8007461	0.90[CEU][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs8008480	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs150773	ZNF254	trans	cerebellum	SCAN
rs150773	NRXN3	cis	cerebellum	SCAN
rs150773	TMED8	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79397400-79399600	Weak transcription	HUVEC	blood vessel

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