Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11159388	0.80[CHD][hapmap]
rs11159389	0.80[CHD][hapmap]
rs11159390	0.80[CHD][hapmap]
rs11847534	0.80[CHD][hapmap]
rs11849200	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11849553	0.80[JPT][hapmap]
rs11849555	0.80[GIH][hapmap];1.00[TSI][hapmap]
rs12050287	0.80[CHD][hapmap]
rs12588364	0.80[CHD][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap]
rs150773	0.81[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs154331	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs154337	0.85[ASN][1000 genomes]
rs154338	0.85[ASN][1000 genomes]
rs220105	0.85[ASN][1000 genomes]
rs2270964	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs3792911	0.95[CHB][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs52897	0.85[ASN][1000 genomes]
rs60536854	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61388877	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7142893	1.00[CEU][hapmap]
rs7144101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7152596	1.00[CEU][hapmap]
rs7154492	1.00[CEU][hapmap]
rs74069214	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74069237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: