Variant report

Variant	rs11850235
Chromosome Location	chr14:78267944-78267945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:78223413..78230716-chr14:78265065..78269735,15	MCF-7	breast:
2	chr14:78266285..78268039-chr17:58469089..58471364,2	MCF-7	breast:
3	chr14:78225549..78228360-chr14:78265163..78268062,4	K562	blood:

Variant related genes	Relation type
ENSG00000100603	Chromatin interaction
ENSG00000170832	Chromatin interaction
ENSG00000141371	Chromatin interaction
ENSG00000268208	Chromatin interaction
ENSG00000197734	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11621593	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1985149	1.00[ASN][1000 genomes]
rs2003594	1.00[ASN][1000 genomes]
rs2111829	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393221	0.92[ASN][1000 genomes]
rs56339806	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58171071	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6493	1.00[ASN][1000 genomes]
rs7151836	1.00[ASN][1000 genomes]
rs72685236	1.00[ASN][1000 genomes]
rs72685238	1.00[ASN][1000 genomes]
rs72685246	1.00[ASN][1000 genomes]
rs72685267	1.00[ASN][1000 genomes]
rs72685297	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72685302	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687223	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687241	1.00[ASN][1000 genomes]
rs72687247	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687256	1.00[ASN][1000 genomes]
rs72688829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688836	0.92[ASN][1000 genomes]
rs7492501	1.00[ASN][1000 genomes]
rs8015796	1.00[ASN][1000 genomes]
rs8015938	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2754594	chr14:78222798-78275549	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78267000-78270400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:78267200-78268200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:78267200-78268400	Enhancers	Placenta	Placenta
4	chr14:78267200-78268400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:78267200-78269400	Weak transcription	K562	blood
6	chr14:78267200-78270200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:78267200-78270400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:78267200-78270600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:78267200-78270800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:78267200-78271800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:78267200-78272400	Weak transcription	Left Ventricle	heart
12	chr14:78267200-78284800	Weak transcription	Brain Angular Gyrus	brain
13	chr14:78267200-78285200	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:78267200-78285200	Weak transcription	Fetal Stomach	stomach
15	chr14:78267200-78285400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:78267200-78285400	Weak transcription	Lung	lung
17	chr14:78267200-78288200	Weak transcription	Spleen	Spleen
18	chr14:78267200-78288800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:78267200-78304200	Weak transcription	HSMMtube	muscle
20	chr14:78267200-78310800	Weak transcription	Esophagus	oesophagus
21	chr14:78267400-78268000	Weak transcription	Fetal Intestine Small	intestine
22	chr14:78267400-78268400	Weak transcription	Adipose Nuclei	Adipose
23	chr14:78267400-78269600	Weak transcription	Psoas Muscle	Psoas
24	chr14:78267400-78269800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:78267400-78270000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr14:78267400-78270400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:78267400-78270400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr14:78267400-78272800	Weak transcription	Stomach Mucosa	stomach
29	chr14:78267400-78285000	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:78267400-78285000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr14:78267400-78285200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:78267400-78285400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:78267600-78268800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr14:78267600-78285000	Weak transcription	Primary T cells from cord blood	blood
35	chr14:78267600-78285400	Weak transcription	Brain Substantia Nigra	brain
36	chr14:78267800-78268000	Enhancers	Dnd41	blood
37	chr14:78267800-78269600	Weak transcription	HepG2	liver
38	chr14:78267800-78285400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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