Variant report

Variant	rs8015796
Chromosome Location	chr14:78155703-78155704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:78154902..78157817-chr14:78159503..78162489,4	MCF-7	breast:
2	chr14:78154241..78156014-chr14:78172945..78175658,2	K562	blood:
3	chr14:78136536..78139253-chr14:78155471..78158284,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100601	Chromatin interaction
ENSG00000119705	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10139828	0.82[JPT][hapmap]
rs10150446	0.82[JPT][hapmap]
rs10150706	0.82[JPT][hapmap]
rs10483884	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11621593	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11622293	1.00[YRI][hapmap]
rs11622411	1.00[YRI][hapmap]
rs11622449	1.00[YRI][hapmap]
rs11624052	1.00[YRI][hapmap]
rs11625607	1.00[YRI][hapmap]
rs11850235	1.00[ASN][1000 genomes]
rs17106478	0.82[JPT][hapmap]
rs17106499	0.82[JPT][hapmap]
rs17752726	1.00[YRI][hapmap]
rs17825434	1.00[YRI][hapmap]
rs17825458	1.00[YRI][hapmap]
rs17825620	1.00[YRI][hapmap]
rs1985149	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2003594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111829	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs28393221	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55734921	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56339806	1.00[ASN][1000 genomes]
rs6493	1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6494	1.00[YRI][hapmap]
rs7151836	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153025	0.82[JPT][hapmap]
rs7155062	1.00[YRI][hapmap]
rs7160485	0.82[JPT][hapmap]
rs72685236	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72685238	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72685246	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72685267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72685288	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72685297	1.00[ASN][1000 genomes]
rs72685302	1.00[ASN][1000 genomes]
rs72687223	1.00[ASN][1000 genomes]
rs72687241	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687247	1.00[ASN][1000 genomes]
rs72687256	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688829	1.00[ASN][1000 genomes]
rs72688836	0.92[ASN][1000 genomes]
rs7492501	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8015313	1.00[YRI][hapmap]
rs8015938	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323652	0.82[JPT][hapmap]
rs9323654	0.82[JPT][hapmap]
rs9972189	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv2757575	chr14:78104897-78212462	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv34940	chr14:78104897-78222798	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv521287	chr14:78108003-78211225	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv869872	chr14:78119527-78161340	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv520021	chr14:78152921-78208294	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78127400-78173200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:78128000-78157800	Weak transcription	Fetal Brain Male	brain
3	chr14:78134400-78163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:78135200-78156200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:78136200-78162800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:78137800-78161200	Weak transcription	Fetal Heart	heart
7	chr14:78138000-78171800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr14:78140200-78156600	Weak transcription	K562	blood
9	chr14:78140400-78157800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr14:78140400-78160400	Weak transcription	Fetal Kidney	kidney
11	chr14:78140400-78172400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:78140600-78158600	Weak transcription	Esophagus	oesophagus
13	chr14:78140600-78173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:78141200-78160400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:78141200-78162800	Weak transcription	Colonic Mucosa	Colon
16	chr14:78141400-78156400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:78141400-78156600	Weak transcription	Brain Substantia Nigra	brain
18	chr14:78141400-78157400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:78141600-78155800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:78141600-78156600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:78142200-78156600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr14:78142200-78157600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:78142200-78161200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:78142600-78162200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:78142600-78162800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:78142800-78155800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr14:78145400-78158600	Weak transcription	Spleen	Spleen
28	chr14:78146400-78157800	Weak transcription	Fetal Lung	lung
29	chr14:78146400-78160000	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:78146400-78161800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr14:78146800-78155800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr14:78147000-78157800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr14:78148200-78158600	Weak transcription	Gastric	stomach
34	chr14:78148400-78157800	Weak transcription	Brain Angular Gyrus	brain
35	chr14:78148400-78158400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:78148400-78158600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr14:78148400-78162800	Weak transcription	Aorta	Aorta
38	chr14:78148400-78162800	Weak transcription	Pancreas	Pancrea
39	chr14:78148400-78164400	Weak transcription	Psoas Muscle	Psoas
40	chr14:78148600-78157800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr14:78148600-78158200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:78148600-78158400	Weak transcription	Colon Smooth Muscle	Colon
43	chr14:78148600-78162800	Weak transcription	NHLF	lung
44	chr14:78148800-78156200	Weak transcription	NH-A	brain
45	chr14:78148800-78156400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr14:78149000-78155800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:78149000-78156400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr14:78149000-78156400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr14:78149000-78156600	Weak transcription	HUVEC	blood vessel
50	chr14:78149000-78157400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links