Variant report
| Variant | rs8015938 |
|---|---|
| Chromosome Location | chr14:78234477-78234478 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000268208 | Chromatin interaction |
| ENSG00000100603 | Chromatin interaction |
| ENSG00000197734 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10483884 | 0.82[EUR][1000 genomes] |
| rs11621593 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11850235 | 1.00[ASN][1000 genomes] |
| rs1985149 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2003594 | 0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2111829 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28393221 | 0.92[ASN][1000 genomes] |
| rs56339806 | 1.00[ASN][1000 genomes] |
| rs6493 | 1.00[ASN][1000 genomes] |
| rs7151836 | 1.00[ASN][1000 genomes] |
| rs72685236 | 1.00[ASN][1000 genomes] |
| rs72685238 | 1.00[ASN][1000 genomes] |
| rs72685246 | 1.00[ASN][1000 genomes] |
| rs72685267 | 0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72685288 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72685297 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72685302 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72687223 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72687241 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72687247 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72687256 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72688829 | 1.00[ASN][1000 genomes] |
| rs72688836 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7492501 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8015796 | 0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9743465 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758362 | chr14:78074180-78262572 | Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| 2 | esv2759998 | chr14:78074180-78262572 | Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| 3 | nsv1043788 | chr14:78178490-78381190 | Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 4 | esv2754594 | chr14:78222798-78275549 | Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78228400-78234800 | Weak transcription | Stomach Smooth Muscle | stomach |
