Variant report

Variant	rs11851400
Chromosome Location	chr14:85633310-85633311
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10132423	0.99[EUR][1000 genomes]
rs10450943	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11159693	0.86[EUR][1000 genomes]
rs1119556	0.86[EUR][1000 genomes]
rs11844847	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850131	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1449417	0.88[EUR][1000 genomes]
rs1449421	0.83[EUR][1000 genomes]
rs1449425	0.86[EUR][1000 genomes]
rs1449426	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1667496	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16917	0.86[EUR][1000 genomes]
rs17201622	0.93[EUR][1000 genomes]
rs28408274	0.84[EUR][1000 genomes]
rs28428973	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4570768	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7151475	0.84[AFR][1000 genomes]
rs7152160	0.94[AFR][1000 genomes]
rs7155560	0.92[EUR][1000 genomes]
rs895910	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048026	chr14:85330544-85686322	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv565423	chr14:85427846-85638746	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1037755	chr14:85618698-85670532	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
7	nsv1053875	chr14:85618698-85673619	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
8	nsv1036755	chr14:85620570-85670532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
9	nsv456356	chr14:85622710-85664479	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv565426	chr14:85622710-85664479	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85632400-85633400	Weak transcription	HUVEC	blood vessel
2	chr14:85633200-85634200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links