Variant report

Variant	rs1449421
Chromosome Location	chr14:85646379-85646380
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10132423	0.84[EUR][1000 genomes]
rs10450943	0.84[EUR][1000 genomes]
rs1119556	0.97[EUR][1000 genomes]
rs11844847	0.83[EUR][1000 genomes]
rs11850131	0.84[EUR][1000 genomes]
rs11851400	0.83[EUR][1000 genomes]
rs1449417	0.95[EUR][1000 genomes]
rs1449425	0.97[EUR][1000 genomes]
rs1449426	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1612975	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1614556	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1667496	0.83[EUR][1000 genomes]
rs16917	0.97[EUR][1000 genomes]
rs17201622	0.83[CEU][hapmap]
rs4570768	0.80[EUR][1000 genomes]
rs895910	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048026	chr14:85330544-85686322	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1037755	chr14:85618698-85670532	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
6	nsv1053875	chr14:85618698-85673619	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
7	nsv1036755	chr14:85620570-85670532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
8	nsv456356	chr14:85622710-85664479	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
9	nsv565426	chr14:85622710-85664479	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85642200-85647200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:85643400-85646600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:85643600-85646400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr14:85644200-85646400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:85645600-85646400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr14:85645600-85646600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:85645800-85646400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr14:85645800-85647000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr14:85646000-85646400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:85646200-85646600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:85646200-85647200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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