Variant report

Variant	rs1667496
Chromosome Location	chr14:85637636-85637637
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10132423	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10450943	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11159693	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1119556	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11628234	0.87[AMR][1000 genomes]
rs11844847	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850131	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11851400	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1449417	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1449421	0.83[EUR][1000 genomes]
rs1449425	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1449426	0.83[EUR][1000 genomes]
rs16917	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17201622	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28408274	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28428973	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4570768	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7155560	0.92[EUR][1000 genomes]
rs895910	0.83[EUR][1000 genomes]
rs9323751	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048026	chr14:85330544-85686322	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv565423	chr14:85427846-85638746	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1037755	chr14:85618698-85670532	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
7	nsv1053875	chr14:85618698-85673619	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
8	nsv1036755	chr14:85620570-85670532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
9	nsv456356	chr14:85622710-85664479	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv565426	chr14:85622710-85664479	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85634400-85638000	Weak transcription	NHEK	skin
2	chr14:85634400-85638200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:85637400-85638600	Weak transcription	Fetal Brain Male	brain
4	chr14:85637400-85639000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links