Variant report

Variant	rs11853477
Chromosome Location	chr15:40435944-40435945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11858747	1.00[ASN][1000 genomes]
rs12148261	1.00[ASN][1000 genomes]
rs1494533	1.00[ASN][1000 genomes]
rs1680156	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17668261	1.00[ASN][1000 genomes]
rs17668415	1.00[ASN][1000 genomes]
rs1801389	1.00[ASN][1000 genomes]
rs3759843	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62018159	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62019961	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62019997	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62020025	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62020027	1.00[ASN][1000 genomes]
rs62020029	1.00[ASN][1000 genomes]
rs62020031	1.00[ASN][1000 genomes]
rs7165187	1.00[ASN][1000 genomes]
rs7171605	1.00[ASN][1000 genomes]
rs7173181	1.00[ASN][1000 genomes]
rs7182070	1.00[ASN][1000 genomes]
rs7183293	1.00[ASN][1000 genomes]
rs74011373	1.00[ASN][1000 genomes]
rs8023415	1.00[ASN][1000 genomes]
rs8023845	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8038982	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3423229	chr15:40417126-40447686	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3500491	chr15:40417175-40446353	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3500492	chr15:40417175-40446353	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40428600-40442200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:40435000-40437200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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